STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1122Hypothetical protein. (653 aa)    
Predicted Functional Partners:
ACH52_0770
FeS cluster assembly scaffold protein NifU.
   
    0.534
ACH52_3290
NifU-like N terminal domain-containing protein.
   
    0.534
ACH52_2472
Sugar ABC transporter substrate-binding protein.
 
     0.532
ACH52_1331
Fibronectin type III domain-containing cell surface protein.
  
     0.527
ACH52_3642
GntR family transcriptional regulator.
 
     0.527
ACH52_2613
Hypothetical protein.
  
     0.478
ACH52_1121
Metal-sensitive transcriptional repressor.
       0.476
ACH52_1065
5'-nucleotidase domain-containing protein.
 
     0.460
kup
Potassium uptake protein Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
  
     0.440
ACH52_2712
MFS transporter.
  
  
 0.431
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.