Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_1260Relaxase/mobilization nuclease domain-containing protein. (521 aa)    
Predicted Functional Partners:
ACH52_1261
MobC mobilization protein.
  
    0.812
ACH52_0573
Hypothetical protein.
 
    0.797
ACH52_2405
ATP binding protein.
 
   
 0.793
ACH52_1736
Phage-related ATP-binding protein.
 
   
 0.776
ACH52_1259
Hypothetical protein.
 
     0.773
ACH52_3385
Type IV conjugative transfer system coupling protein TraD.
 
   
 0.754
ACH52_3674
RNA polymerase sigma factor sigma-70 family.
 
     0.726
ACH52_0002
DNA polymerase III beta subunit DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...]
  
 
 0.722
ACH52_3380
AAA-like domain-containing protein.
 
   
 0.720
addA
Helicase-exonuclease AddA subunit; ATP-dependent DNA helicase.
  
 
 0.717
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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