Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1452ABC transporter ATP-binding protein. (240 aa)    
Predicted Functional Partners:
ACH52_1453
ABC transporter permease protein.
 
  
 0.956
ACH52_1454
ABC transporter permease protein.
 
  
 0.955
ACH52_0765
ABC transporter ATP-binding protein.
    
0.890
ACH52_1456
Two component system histidine kinase.
 
     0.841
ACH52_3615
Amino acid ABC transporter ATP-binding protein.
 
     
0.784
ACH52_1455
Two component system response regulator.
 
    0.769
ACH52_2849
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
      0.737
ACH52_1244
ABC transporter ATP-binding protein.
 
     
0.725
ACH52_1701
ABC transporter permease protein.
 
  
 0.691
ACH52_2736
ABC transporter ATP-binding protein.
    
0.592
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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