Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_1484Hypothetical protein. (243 aa)    
Predicted Functional Partners:
ACH52_1145
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.949
ACH52_1483
Aminotransferase DegT/DnrJ/EryC1/StrS family.
 
  
 0.813
ACH52_1482
Polysaccharide biosynthesis protein.
     
 0.726
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
  
 0.672
ACH52_3504
NOL1/NOP2/sun family RNA methylase.
  
  
 0.651
ACH52_1481
4-alpha-L-fucosyltransferase glycosyl transferase GT56 family.
     
 0.636
ACH52_0227
Serine/threonine protein phosphatase.
  
   0.597
ACH52_1147
Serine/threonine protein phosphatase.
  
   0.597
ACH52_2164
Serine/threonine protein phosphatase.
  
   0.597
priA
Primosomal protein N' PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
    0.589
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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