Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACH52_1561PTS system glucitol/sorbitol-specific IIC component. (176 aa)    
Predicted Functional Partners:
ACH52_1562
PTS system glucitol/sorbitol-specific IIBC component.
 0.999
ACH52_0170
PTS system glucitol/sorbitol-specific IIBC component.
 0.997
ACH52_1563
PTS system glucitol/sorbitol-specific IIA component.
 
 
 0.997
ACH52_0171
PTS system glucitol/sorbitol-specific IIA component.
 
 
 0.992
ACH52_0169
PTS system glucitol/sorbitol-specific IIC component.
  
  
 
0.908
ACH52_1564
SAF domain-containing protein.
 
     0.881
ACH52_1560
Glucitol operon activator GutM.
  
  
 0.799
ACH52_2185
PTS system galactitol-specific IIC component.
 
   
 0.661
ACH52_0009
PTS system IIB component.
 
     0.656
ACH52_0172
PTS system phosphocarrier protein HPr.
    
  0.654
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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