Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_1586Selenium metabolism protein SsnA. (444 aa)    
Predicted Functional Partners:
ACH52_1585
Selenate reductase YgfK subunit.
 
  
 0.955
ACH52_1581
Selenium-dependent xanthine dehydrogenase Xdh.
 
  
 0.924
ACH52_1584
Dihydropyrimidinase HydA.
 
  
 0.890
ACH52_1591
Knotted carbamoyltransferase YgeW; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.849
ACH52_1589
Selenium metabolism hydrolase.
 
  
 0.845
ACH52_1588
Diaminopropionate ammonia-lyase DpaL.
 
  
 0.824
ACH52_0616
Peptidase M20 family.
 
  
 0.734
ACH52_1587
YheO-like PAS domain-containing protein.
 
     0.707
birA
Bifunctional biotin--acetyl-CoA-carboxylase synthetase/biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.660
ACH52_1598
Selenium-dependent molybdenum hydroxylase system protein YqeB family.
 
  
 0.645
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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