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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide water dikinase SelD; Synthesizes selenophosphate from selenide and ATP. (365 aa)    
Predicted Functional Partners:
ACH52_1601
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.965
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
    
 0.897
ACH52_1599
Cysteine desulfurase family protein.
   
 0.886
ACH52_1596
Selenium-dependent hydroxylase accessory protein YqeC.
     
 0.839
ACH52_1597
Molybdenum cofactor cytidylyltransferase MocA.
     
 0.831
ACH52_1598
Selenium-dependent molybdenum hydroxylase system protein YqeB family.
 
   
 0.826
ACH52_1424
Cysteine desulfurase.
    
 0.815
ACH52_1602
Hypothetical protein.
       0.806
ACH52_1605
Xanthine dehydrogenase accessory protein XdhC.
 
   
 0.759
ACH52_1603
Molybdopterin-binding protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
     
 0.752
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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