STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1628Polysaccharide biosynthesis protein. (486 aa)    
Predicted Functional Partners:
ACH52_1627
Glycosyl transferase GT2 family.
 
  
 0.945
ACH52_1629
Aminotransferase DegT/DnrJ/EryC1/StrS family.
 
  
 0.942
ACH52_1475
NAD dependent epimerase/dehydratase.
  
  
 0.757
ACH52_1483
Aminotransferase DegT/DnrJ/EryC1/StrS family.
 
  
 0.752
ACH52_1630
Hypothetical protein.
     
 0.728
ACH52_0677
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.718
ACH52_0667
dTDP-glucose 4,6-dehydratase RfbB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.706
ACH52_0665
Glucose-1-phosphate thymidylyltransferase RfbA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.703
ACH52_2104
UDP-galactopyranose mutase Glf.
  
  
 0.699
ACH52_0439
Nucleotide sugar dehydrogenase.
  
  
 0.648
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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