STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1630Hypothetical protein. (243 aa)    
Predicted Functional Partners:
ACH52_1145
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.970
ACH52_1629
Aminotransferase DegT/DnrJ/EryC1/StrS family.
 
  
 0.811
ACH52_1627
Glycosyl transferase GT2 family.
 
  
 0.800
ACH52_1628
Polysaccharide biosynthesis protein.
     
 0.728
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
  
 0.690
ACH52_3504
NOL1/NOP2/sun family RNA methylase.
  
  
 0.671
ACH52_0227
Serine/threonine protein phosphatase.
  
   0.593
ACH52_1147
Serine/threonine protein phosphatase.
  
   0.593
ACH52_2164
Serine/threonine protein phosphatase.
  
   0.593
priA
Primosomal protein N' PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
    0.567
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.