STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1701ABC transporter permease protein. (244 aa)    
Predicted Functional Partners:
ACH52_1702
ABC transporter permease protein.
 
   
 0.959
ACH52_1703
ABC transporter ATP-binding protein.
 
  
 0.948
ACH52_1705
Two component system histidine kinase.
 
     0.864
ACH52_1704
Two component system response regulator.
 
   
 0.774
ACH52_1452
ABC transporter ATP-binding protein.
 
  
 0.682
ACH52_1841
ABC transporter ATP-binding protein.
 
  
 0.620
ACH52_2730
ABC transporter ATP-binding protein.
 
  
 0.600
ACH52_1674
ABC transporter ATP-binding protein.
 
  
 0.470
ACH52_1080
ABC transporter permease protein.
  
    0.461
ACH52_2546
ABC transporter ATP-binding protein.
 
  
 0.454
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.