Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_19602-hydroxyglutaryl-CoA dehydratase. (1409 aa)    
Predicted Functional Partners:
ACH52_3084
Hypothetical protein.
 
     0.701
ACH52_1022
Hypothetical protein.
 
     0.630
ACH52_1961
Carbohydrate kinase FGGY family.
       0.620
ACH52_2939
Anaerobic ribonucleoside-triphosphate reductase activating protein NrdG; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
 
     0.576
ACH52_3805
Hypothetical protein.
 
     0.573
ACH52_2937
Anaerobic ribonucleoside-triphosphate reductase NrdD.
  
    0.521
ACH52_1002
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
     
 0.519
ACH52_0211
Serine/threonine protein kinase.
       0.516
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase RsmI; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.503
ACH52_1581
Selenium-dependent xanthine dehydrogenase Xdh.
     
 0.498
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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