STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_19602-hydroxyglutaryl-CoA dehydratase. (1409 aa)    
Predicted Functional Partners:
ACH52_3084
Hypothetical protein.
 
    0.682
ACH52_0184
4-hydroxybutyryl-CoA dehydratase.
      
 0.636
ACH52_1002
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
  
  
 0.636
ACH52_1961
Carbohydrate kinase FGGY family.
       0.621
ACH52_1022
Hypothetical protein.
 
    0.607
ACH52_3805
Hypothetical protein.
 
    0.545
ACH52_2939
Anaerobic ribonucleoside-triphosphate reductase activating protein NrdG; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
 
     0.544
ACH52_2772
butyryl-CoA:acetate CoA-transferase.
      
 0.529
ACH52_2937
Anaerobic ribonucleoside-triphosphate reductase NrdD.
  
    0.493
murB
UDP-N-acetylenolpyruvoylglucosamine reductase MurB; Cell wall formation.
  
    0.491
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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