Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1968ABC transporter ATP-binding protein. (294 aa)    
Predicted Functional Partners:
ACH52_1967
ABC transporter permease protein.
 
   0.958
ACH52_1966
ABC transporter permease protein.
 
   0.947
ACH52_1970
RNA polymerase sigma factor sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.848
ACH52_1969
Hypothetical protein.
       0.773
ACH52_3548
GntR family transcriptional regulator.
  
    0.553
ACH52_1971
HTH domain-containing protein.
       0.497
ACH52_1972
Hypothetical protein.
       0.497
ACH52_1973
Hypothetical protein.
       0.497
ACH52_1974
Phage regulatory protein Rha family.
       0.497
ACH52_3767
Sugar ABC transporter permease protein.
     
 0.485
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.