STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_1998GGDEF domain-containing protein. (663 aa)    
Predicted Functional Partners:
ACH52_3042
GGDEF/EAL domain-containing protein.
 
 0.991
ACH52_2565
GGDEF/EAL domain-containing protein.
  
 0.985
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
 
 
 0.984
ACH52_3164
GGDEF/EAL domain-containing protein.
  
 0.974
ACH52_0164
GGDEF/EAL domain-containing protein.
 
0.967
ACH52_1068
GGDEF/EAL domain-containing protein.
 
0.952
ACH52_2000
GGDEF/response regulator domain-containing protein.
 
  
 0.951
ACH52_0564
GGDEF/EAL domain-containing protein.
  
 0.940
ACH52_0854
GGDEF/EAL domain-containing protein.
  
 0.931
ACH52_0283
GGDEF/PAS domain-containing protein.
 
 
 0.930
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.