Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2003ABC transporter ATP-binding protein. (311 aa)    
Predicted Functional Partners:
ACH52_2004
ABC transporter permease protein.
  
 0.964
ACH52_2368
ABC transporter permease protein.
 
 
    0.886
ACH52_2848
Branched-chain amino acid ABC transporter ATP-binding protein.
 
     
0.559
gshAB
Glutamate--cysteine ligase/glutathione synthase GshAB; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
  
   
 0.544
ACH52_3677
ABC transporter ATP-binding/permease protein.
 
 
0.495
ACH52_3767
Sugar ABC transporter permease protein.
     
 0.485
ACH52_1673
ABC transporter permease protein.
  
 
 0.463
ACH52_0568
ABC transporter permease protein.
  
 
 0.437
ACH52_3125
ABC transporter ATP-binding/permease protein.
 
 
0.426
ACH52_1955
ABC transporter ATP-binding/permease protein.
 
 
0.424
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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