STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2004ABC transporter permease protein. (256 aa)    
Predicted Functional Partners:
ACH52_2003
ABC transporter ATP-binding protein.
  
 0.962
gshAB
Glutamate--cysteine ligase/glutathione synthase GshAB; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
 
   
 0.474
ACH52_2079
Nitroreductase family protein.
  
  
 0.472
ACH52_2552
Nitroreductase family protein.
  
  
 0.472
ACH52_2826
Nitroreductase family protein.
  
  
 0.472
ACH52_0940
CAAX amino terminal protease family protein.
  
  
 0.471
ACH52_3810
ABC transporter ATP-binding protein.
  
 0.430
ACH52_1865
ABC transporter ATP-binding protein.
  
 0.424
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.