STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2008Trypsin-like serine protease. (411 aa)    
Predicted Functional Partners:
ACH52_2006
Two component system histidine kinase.
 
  
 0.797
ACH52_2007
Two component system response regulator.
 
  
 0.794
rplK
Ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
   0.636
ACH52_3488
Crotonase Crt; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.631
rpsF
Ribosomal protein S6 RpsF; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.622
rplT
Ribosomal protein L20 RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
   0.589
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
  
  
 0.586
rpsP
Ribosomal protein S16 RpsP; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.580
rplD
Ribosomal protein L4 RplD; Forms part of the polypeptide exit tunnel.
   
 
 0.577
rpsI
Ribosomal protein S9 RpsI; Belongs to the universal ribosomal protein uS9 family.
   
   0.573
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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