Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2047Cyclase family protein. (324 aa)    
Predicted Functional Partners:
ACH52_2048
Hypothetical protein.
       0.703
ACH52_3784
HTH/cupin domain-containing protein.
  
    0.539
ACH52_2046
Extradiol ring-cleavage dioxygenase.
       0.490
ACH52_2225
Non-ribosomal peptide synthetase.
 
   
 0.477
ACH52_2045
Radical SAM domain-containing protein.
       0.468
ACH52_2051
Hypothetical protein.
       0.461
ACH52_2049
Sigma-54-dependent transcriptional regulator.
       0.439
ACH52_2052
4-hydroxythreonine-4-phosphate dehydrogenase PdxA; Belongs to the PdxA family.
       0.437
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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