STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2061Hypothetical protein. (193 aa)    
Predicted Functional Partners:
ACH52_2062
Ion transport protein.
 
     0.834
ACH52_2063
Hypothetical protein.
       0.737
ACH52_3642
GntR family transcriptional regulator.
  
     0.549
ACH52_3387
Hypothetical protein.
  
     0.497
ACH52_3384
TrbC/VIRB2 family protein.
  
     0.461
ACH52_1068
GGDEF/EAL domain-containing protein.
 
 
 0.458
ACH52_2450
Pyruvate:ferredoxin oxidoreductase.
  
   0.449
ACH52_3042
GGDEF/EAL domain-containing protein.
  
 
 0.448
ACH52_1830
CarD family transcriptional regulator.
  
     0.447
ACH52_3388
Hypothetical protein.
  
     0.446
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.