Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_2192Cell surface protein. (1307 aa)    
Predicted Functional Partners:
ACH52_0720
Peptidyl-prolyl cis-trans isomerase.
   
 
 0.647
ACH52_1290
Peptidyl-prolyl cis-trans isomerase PpiC-type.
   
 
 0.647
ACH52_3427
Fibro-slime domain-containing cell surface protein.
 
     0.534
ACH52_2415
Peptidase M50 family.
   
    0.509
ACH52_0631
Hypothetical protein.
 
     0.483
rplM
Ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.465
ACH52_2039
Adenosylcobinamide amidohydrolase CbiZ.
 
     0.465
ACH52_0507
histidyl-tRNA synthetase HisS; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.464
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
    0.447
ACH52_0632
Cobalt ABC transporter permease protein.
 
     0.445
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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