Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACH52_2201ParB domain-containing protein nuclease; Belongs to the ParB family. (321 aa)    
Predicted Functional Partners:
ACH52_2202
ParA family protein.
 
 
 0.958
ACH52_3403
ParA family protein.
 
 
 0.848
ACH52_0491
MinD/ParA family protein.
 
 
 0.832
ACH52_3904
Chromosome partitioning protein ParA.
 
 
 0.832
ACH52_2777
Hypothetical protein.
  
 
 0.564
rsmG
rRNA small subunit methyltransferase G GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.564
ACH52_2200
Hypothetical protein.
       0.518
ACH52_2199
Hypothetical protein.
       0.457
ACH52_2198
Hypothetical protein.
       0.441
ACH52_3683
AAA-like domain-containing protein.
    
 
 0.432
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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