Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2250Fe hydrogenase HymC subunit. (247 aa)    
Predicted Functional Partners:
ACH52_1166
NADH dehydrogenase subunit F.
 
 0.999
ACH52_2251
Fe hydrogenase HymB subunit.
 
 0.999
ACH52_3195
Iron-dependent hydrogenase subunit B HydB.
 
 0.999
ACH52_1165
NADH dehydrogenase subunit E.
 
 0.997
ACH52_2252
Fe hydrogenase HymA subunit.
 
 0.994
ACH52_3198
Iron-dependent hydrogenase subunit C HydC.
 
 0.975
ACH52_2450
Pyruvate:ferredoxin oxidoreductase.
  
 0.956
ACH52_2255
4Fe-4S double cluster binding domain-containing protein.
 
 
 0.928
ACH52_0250
4Fe-4S binding domain-containing protein.
 
 0.923
ACH52_0911
Thioredoxin-like ferredoxin.
  
 0.904
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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