Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2286Sortase SrtB family. (250 aa)    
Predicted Functional Partners:
ACH52_2177
Sortase family protein.
     
 0.526
ACH52_3406
Sortase family protein.
     
 0.526
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
      0.502
ACH52_2287
Hypothetical protein.
       0.462
ACH52_2181
CnaB domain-containing cell surface protein.
 
 
   0.458
ACH52_1447
ATPase.
      
 0.444
ACH52_3528
CnaB/collagen binding domain-containing cell surface protein.
 
 
   0.434
ACH52_2288
Hypothetical protein.
       0.425
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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