Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ACH52_2298Amino acid ABC transporter ATP-binding protein. (252 aa)    
Predicted Functional Partners:
ACH52_2299
Amino acid ABC transporter permease protein.
 0.999
ACH52_0691
Amino acid ABC transporter permease protein.
 
 0.995
ACH52_2300
Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.992
ACH52_3616
Amino acid ABC transporter permease protein.
 
 0.983
ACH52_0690
Amino acid ABC transporter substrate-binding protein.
 
 
 0.952
ACH52_2271
Amino acid ABC transporter permease protein.
 
 
 0.938
ACH52_2849
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.909
ACH52_2368
ABC transporter permease protein.
 
      0.900
ACH52_3596
Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
   
0.900
ACH52_1334
ABC transporter ATP-binding/permease protein.
     
0.874
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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