STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2452Isopropylmalate/isohomocitrate dehydrogenase. (401 aa)    
Predicted Functional Partners:
ACH52_3248
2-oxoacid:ferredoxin oxidoreductase alpha subunit.
     
 0.908
ACH52_2776
2-oxoacid:ferredoxin oxidoreductase delta subunit.
  
 
 0.907
ACH52_2774
2-oxoacid:ferredoxin oxidoreductase beta subunit.
   
 
 0.904
ACH52_3249
2-oxoacid:ferredoxin oxidoreductase beta subunit.
   
 
 0.904
leuC
3-isopropylmalate dehydratase large subunit LeuC; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
 
 
 0.900
ACH52_2773
2-oxoacid:ferredoxin oxidoreductase gamma subunit.
     
 0.900
ACH52_2775
2-oxoacid:ferredoxin oxidoreductase alpha subunit.
     
 0.900
leuD
3-isopropylmalate dehydratase small subunit LeuD; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.
  
 0.881
ACH52_1872
2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.
 
 0.871
ACH52_0827
Aminotransferase.
 
 0.861
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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