STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2462Hypothetical protein. (120 aa)    
Predicted Functional Partners:
ACH52_2744
Hypothetical protein.
  
  
 0.627
ACH52_3195
Iron-dependent hydrogenase subunit B HydB.
  
  
 0.569
ACH52_2450
Pyruvate:ferredoxin oxidoreductase.
  
  
 0.568
ACH52_0250
4Fe-4S binding domain-containing protein.
  
  
 0.466
rnfB
Electron transport complex RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
  
 0.466
ACH52_1585
Selenate reductase YgfK subunit.
  
  
 0.461
birA
Bifunctional biotin--acetyl-CoA-carboxylase synthetase/biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.454
ACH52_2461
DeoR family transcriptional regulator.
  
    0.445
ACH52_1160
4Fe-4S binding domain-containing protein.
  
  
 0.442
ACH52_2079
Nitroreductase family protein.
  
  
 0.439
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.