STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2487Alpha/beta hydrolase. (239 aa)    
Predicted Functional Partners:
ACH52_2485
GNAT family acetyltransferase.
      0.794
ACH52_2488
Hypothetical protein.
       0.773
ACH52_2489
GNAT family acetyltransferase.
       0.773
rnr
Ribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.582
ACH52_2486
MerR family transcriptional regulator.
       0.547
ACH52_1080
ABC transporter permease protein.
 
     0.471
ACH52_0907
MFS transporter.
  
    0.449
ACH52_3466
ABC transporter ATP-binding protein.
   
    0.414
ACH52_2490
Peptidase M15 family.
       0.411
ACH52_2491
Hypothetical protein.
       0.411
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.