Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ACH52_2576Hypothetical protein. (191 aa)    
Predicted Functional Partners:
rpsE
Ribosomal protein S5 RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 0.914
ACH52_2251
Fe hydrogenase HymB subunit.
  
 0.823
ACH52_0833
Phytoene synthase.
    
 0.821
ACH52_1037
Glycosyl transferase GT2 family.
   
 
 0.797
ACH52_2575
Hypothetical protein.
       0.785
ACH52_3195
Iron-dependent hydrogenase subunit B HydB.
   
 0.777
ACH52_2574
Sel1 repeat domain-containing protein.
  
    0.775
rplD
Ribosomal protein L4 RplD; Forms part of the polypeptide exit tunnel.
    
  0.690
ACH52_0698
DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.
  
 0.662
rpsO
Ribosomal protein S15 RpsO; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
  0.602
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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