Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araBRibulokinase AraB. (556 aa)    
Predicted Functional Partners:
ACH52_2588
L-ribulose-5-phosphate 4-epimerase AraD.
 
 
 0.989
ACH52_3493
Class II aldolase/adducin family protein.
 
 
 0.958
ACH52_0008
Ribulose-phosphate 3-epimerase Rpe; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.900
ACH52_3830
Ribulose-phosphate 3-epimerase Rpe.
     
  0.900
ACH52_2587
Iron-containing alcohol dehydrogenase.
 
    0.870
ACH52_0438
Sugar-phosphate isomerase RpiB/LacA/LacB family.
    
  0.808
ACH52_3623
Sugar-phosphate isomerase RpiB/LacA/LacB family.
    
  0.808
ACH52_0166
Iron-containing alcohol dehydrogenase.
 
    0.793
ACH52_0613
Iron-containing alcohol dehydrogenase.
 
    0.777
ACH52_2213
Iron-containing alcohol dehydrogenase.
 
    0.646
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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