STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2628Lysozyme-like family protein. (206 aa)    
Predicted Functional Partners:
ACH52_3693
Hypothetical protein.
 
  
 0.839
ACH52_3680
Conjugative transposon protein TcpC.
 
   0.817
ACH52_3689
Hypothetical protein.
 
    0.812
ACH52_3692
FtsK/SpoIIIE family protein.
 
  
 0.808
ACH52_3685
Antirestriction protein ArdA.
 
    0.803
ACH52_3682
Hypothetical protein.
 
  
 0.802
ACH52_3684
TcpE family.
 
    0.798
ACH52_3691
Replication initiation factor family protein.
 
    0.793
ACH52_3683
AAA-like domain-containing protein.
 
     0.787
ACH52_3694
Hypothetical protein.
 
     0.786
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.