Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
rpmERibosomal protein L31 RpmE; Binds the 23S rRNA. (68 aa)    
Predicted Functional Partners:
rpsT
Ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.
  
 
 0.993
rpsO
Ribosomal protein S15 RpsO; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.992
rplS
Ribosomal protein L19 RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.991
rpsP
Ribosomal protein S16 RpsP; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmF
Ribosomal protein L32 RpmF; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.985
rpmB
Ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.983
rplU
Ribosomal protein L21 RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.982
rpsR
Ribosomal protein S18 RpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.981
rpsI
Ribosomal protein S9 RpsI; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.980
rpsD
Ribosomal protein S4 RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
 
 0.979
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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