STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_2874Addiction module antitoxin PhdYeFM family. (87 aa)    
Predicted Functional Partners:
ACH52_2873
Addiction module toxin RelE family.
 
   
 0.949
ACH52_0324
Addiction module toxin RelE family.
 
   
 0.745
ACH52_2532
Addiction module toxin RelE family.
 
   
 0.737
ACH52_3211
Addiction module toxin RelE family.
   
 
 0.668
ACH52_2533
Addiction module antitoxin RelB family.
 
  
 0.557
ACH52_0323
Addiction module antitoxin RelB family.
 
  
 0.537
ACH52_2875
Hypothetical protein.
       0.439
ACH52_1060
DOC family toxin protein.
 
     0.420
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.