Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_2907D-alanyl-D-alanine carboxypeptidase VanY. (262 aa)    
Predicted Functional Partners:
ACH52_2854
Penicillin-binding protein 1A family.
  
  
 0.919
ACH52_1510
Cell division protein FtsI.
     
 0.916
ACH52_1188
D-alanyl-D-alanine carboxypeptidase S11 family; Belongs to the peptidase S11 family.
    
 0.913
ACH52_1385
Penicillin-binding protein 1A family.
     
 0.909
ACH52_2906
Hypothetical protein.
       0.628
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.511
ACH52_2633
PTS system glucose-specific IIABC component.
       0.506
ACH52_2908
Hypothetical protein.
       0.456
ACH52_0393
Calcium-transporting P-type ATPase.
      
 0.442
ACH52_2909
Hypothetical protein.
       0.418
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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