Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_3067Glycoside hydrolase GH3 family; Belongs to the glycosyl hydrolase 3 family. (873 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase ProC; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.723
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
  
 0.607
ACH52_3066
MerR-family transcriptional regulator.
       0.551
ACH52_2633
PTS system glucose-specific IIABC component.
  
  
 0.532
ACH52_3444
Bacterial SH3 domain-containing protein.
     
 0.500
ACH52_3069
ABC transporter ATP-binding protein.
       0.477
ACH52_3070
ABC transporter permease protein.
       0.471
ACH52_3341
Beta-lactamase family protein.
 
  
 0.457
ACH52_3065
Glycoprotease family protein.
       0.405
ACH52_3072
Two component system histidine kinase.
       0.402
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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