Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACH52_3073Two component system response regulator. (204 aa)    
Predicted Functional Partners:
ACH52_3072
Two component system histidine kinase.
 
 
 0.961
ACH52_0738
Two component system histidine kinase.
 
 
 0.867
ACH52_3220
Two component system histidine kinase.
 
 
 0.867
ACH52_1866
Two component system histidine kinase.
 
 
 0.863
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
 
 
 0.830
ACH52_1071
Two component system histidine kinase/response regulator hybrid protein.
  
 
 0.725
ACH52_2350
Two component system histidine kinase/response regulaor/substrate-binding hybrid protein.
  
 
 0.725
ACH52_3806
Two component system histidine kinase/response regulator hybrid protein.
  
 
 0.725
ACH52_3070
ABC transporter permease protein.
 
    0.701
ACH52_3069
ABC transporter ATP-binding protein.
       0.633
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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