STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3086Hypothetical protein. (283 aa)    
Predicted Functional Partners:
ACH52_1639
MFS transporter.
  
     0.720
ACH52_0963
Hypothetical protein.
 
    0.707
ACH52_2982
Vitamin B12 dependent methionine synthase activation domain-containing protein.
 
     0.675
ACH52_3320
Hypothetical protein.
 
    0.642
ACH52_3163
TetR family transcriptional regulator.
  
   
 0.630
topB
DNA topoisomerase III TopB; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...]
       0.623
ACH52_1469
GTP-binding protein.
  
     0.621
ACH52_2963
VanZ-like family protein.
  
     0.610
ACH52_1935
Hypothetical protein.
  
     0.590
ACH52_2892
Hypothetical protein.
  
     0.589
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.