STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3089Formate dehydrogenase alpha subunit FdhA. (895 aa)    
Predicted Functional Partners:
ACH52_3195
Iron-dependent hydrogenase subunit B HydB.
 
 0.978
ACH52_1166
NADH dehydrogenase subunit F.
 
 0.970
ACH52_2251
Fe hydrogenase HymB subunit.
 
 0.968
ACH52_3087
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
 
 0.961
ACH52_0377
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 0.942
ACH52_3194
Iron-dependent hydrogenase subunit A HydA.
 
 
 
0.935
ACH52_0912
Iron hydrogenase.
   
 
 0.927
ACH52_2255
4Fe-4S double cluster binding domain-containing protein.
 
 0.923
rnfB
Electron transport complex RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.920
ACH52_2538
Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
  
 0.844
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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