Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3173PadR family transcriptional regulator. (107 aa)    
Predicted Functional Partners:
ACH52_3172
Hypothetical protein.
 
     0.954
ACH52_3171
Hypothetical protein.
       0.805
ACH52_0592
PadR family transcriptional regulator.
  
     0.774
ACH52_0591
Hypothetical protein.
 
     0.602
ACH52_3174
YhfZ C-terminal domain-containing protein.
  
    0.502
ACH52_3170
Radical SAM domain-containing protein.
  
    0.448
ACH52_3175
Electron transfer flavoprotein alpha subunit.
  
    0.411
ACH52_3178
Electron transfer flavoprotein alpha subunit.
  
    0.411
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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