Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3199PHP domain-containing protein. (240 aa)    
Predicted Functional Partners:
ACH52_3200
DRTGG domain-containing protein.
 
   
 0.958
ACH52_3201
Iron hydrogenase.
 
   
 0.958
ACH52_3202
Histidine kinase.
 
   
 0.946
ACH52_3203
DRTGG domain-containing protein.
 
   
 0.946
ACH52_3196
Iron-dependent hydrogenase subunit D HydD.
 
   
 0.897
ACH52_3197
Histidine kinase.
 
   
 0.897
ACH52_3195
Iron-dependent hydrogenase subunit B HydB.
 
   
 0.648
ACH52_3194
Iron-dependent hydrogenase subunit A HydA.
 
   
 0.578
ACH52_3198
Iron-dependent hydrogenase subunit C HydC.
     
 0.522
ACH52_3204
AAA domain-containing protein.
       0.469
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.