STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3205Metallophosphoesterase. (363 aa)    
Predicted Functional Partners:
ACH52_3852
Exonuclease SbcC.
 
 0.996
polA
DNA polymerase I PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.989
ACH52_3204
AAA domain-containing protein.
 
 
 0.970
ACH52_3780
ATP-dependent DNA helicase RecQ.
  
 0.931
ACH52_0083
Pyruvate ferredoxin oxidoreductase beta subunit PorB.
     
 0.787
ACH52_0183
2-ketoisovalerate ferredoxin oxidoreductase beta subunit.
     
 0.787
ACH52_2583
Rad3-related DNA helicase.
  
 0.758
recA
DNA recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.687
ACH52_0662
Aconitate hydratase.
   
  
 0.659
ACH52_1872
2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.
      
 0.641
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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