STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3239Two component system LytTr family DNA-binding response regulator. (243 aa)    
Predicted Functional Partners:
ACH52_3238
Two component system histidine kinase.
 
  
 0.911
ACH52_3701
Two component system histidine kinase.
 
 
 0.815
ACH52_2060
Signal transduction protein with C-terminal ATPase domain protein.
 
  
 0.797
ACH52_2066
Two component system histidine kinase.
 
  
 0.780
ACH52_1255
Signal transduction protein with C-terminal ATPase domain protein.
 
  
 0.759
ACH52_0936
Signal transduction protein with C-terminal ATPase domain protein.
 
  
 0.741
ACH52_0472
Two component system histidine kinase.
 
  
 0.736
ACH52_2374
Signal transduction protein with C-terminal ATPase domain protein.
 
   
 0.736
ACH52_3169
Two component system histidine kinase.
 
 
 0.724
ACH52_1198
Two component system histidine kinase.
 
  
 0.717
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.