Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_3262Precorrin-4 C11-methyltransferase CbiF. (253 aa)    
Predicted Functional Partners:
ACH52_3260
precorrin-3B C17-methyltransferase CbiH.
 
 0.999
ACH52_3261
Cobalamin biosynthesis protein CbiG.
 
 0.999
ACH52_3259
Precorrin-6x reductase CbiJ.
 
  
 0.992
CbiC
precorrin-8X methylmutase CbiC.
 
  
 0.988
ACH52_3263
Cobaltochelatase CbiK.
  
 0.982
cobQ
Cobyric acid synthase CbiP; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.981
ACH52_3278
Precorrin-2 C(20)-methyltransferase CbiL; Belongs to the precorrin methyltransferase family.
 
  
 0.970
ACH52_3275
precorrin-6Y C5,15-methyltransferase (decarboxylating) CbiT subunit.
 
  
 0.955
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.944
ACH52_3267
Siroheme synthase CysG.
   
 0.942
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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