Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_3274Hypothetical protein. (128 aa)    
Predicted Functional Partners:
ACH52_3275
precorrin-6Y C5,15-methyltransferase (decarboxylating) CbiT subunit.
       0.689
ACH52_3276
Precorrin-6y C5,15-methyltransferase (decarboxylating) CbiE subunit.
       0.689
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.689
ACH52_0267
Hypothetical protein.
 
 
 0.674
ACH52_3573
ABC1 family protein.
  
 
 0.588
tmcAL
HIGH nucleotidyl transferase family protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.488
ACH52_3273
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.459
ACH52_3272
ACT domain-containing protein.
       0.447
ACH52_3278
Precorrin-2 C(20)-methyltransferase CbiL; Belongs to the precorrin methyltransferase family.
       0.446
CbiC
precorrin-8X methylmutase CbiC.
       0.446
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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