STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiDCobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. (375 aa)    
Predicted Functional Partners:
CbiC
precorrin-8X methylmutase CbiC.
  
 0.999
ACH52_3275
precorrin-6Y C5,15-methyltransferase (decarboxylating) CbiT subunit.
 
  
 0.998
ACH52_3276
Precorrin-6y C5,15-methyltransferase (decarboxylating) CbiE subunit.
  
 0.998
cbiA
Cobyrinic acid a,c-diamide synthase CbiA; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
  
 0.988
ACH52_3278
Precorrin-2 C(20)-methyltransferase CbiL; Belongs to the precorrin methyltransferase family.
  
 0.987
ACH52_3260
precorrin-3B C17-methyltransferase CbiH.
 
  
 0.978
ACH52_3261
Cobalamin biosynthesis protein CbiG.
 
  
 0.968
ACH52_3262
Precorrin-4 C11-methyltransferase CbiF.
 
  
 0.959
ACH52_3280
GHMP kinase family protein.
 
  
 0.959
ACH52_3259
Precorrin-6x reductase CbiJ.
 
  
 0.950
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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