Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3409Toprim domain-containing protein. (327 aa)    
Predicted Functional Partners:
ACH52_2144
TraG family protein.
 
     0.779
ACH52_2135
AAA-like domain-containing protein.
 
   
 0.766
ACH52_3385
Type IV conjugative transfer system coupling protein TraD.
 
     0.707
ACH52_1259
Hypothetical protein.
 
     0.695
ACH52_3402
ParB family protein; Belongs to the ParB family.
 
     0.685
ACH52_3390
Relaxase/mobilization nuclease domain-containing protein.
 
  
 0.678
ACH52_2160
Relaxase/mobilization nuclease domain-containing protein.
 
     0.661
ACH52_2157
SNF2 family N-terminal domain-containing protein.
 
     0.657
ACH52_1256
ParB family protein.
 
     0.644
ACH52_3380
AAA-like domain-containing protein.
 
   
 0.637
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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