Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_3444Bacterial SH3 domain-containing protein. (478 aa)    
Predicted Functional Partners:
ACH52_2633
PTS system glucose-specific IIABC component.
  
  
 0.999
ACH52_0874
PTS system alpha-glucoside-specific IIBC component.
  
  
 0.984
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
  
  
 0.781
ACH52_1068
GGDEF/EAL domain-containing protein.
 
  
 0.757
ACH52_0164
GGDEF/EAL domain-containing protein.
  
  
 0.722
ACH52_3501
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
 
 0.695
ACH52_0209
Trypsin-like serine protease.
  
 
 0.687
ACH52_0213
Type VII secretion protein EssC.
  
  
 0.666
ACH52_1805
Phage-related ytic enzyme.
     
 0.666
ACH52_2816
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.658
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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