STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_3604Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family. (381 aa)    
Predicted Functional Partners:
ACH52_2074
Cobalamin B12-binding domain-containing protein.
 
    0.798
ACH52_2570
Hypothetical protein.
 
     0.772
ACH52_3297
Hypothetical protein.
 
     0.768
ACH52_3603
Hypothetical protein.
       0.768
ACH52_0011
Hypothetical protein.
  
     0.755
ACH52_0402
GntR family transcriptional regulator.
 
     0.743
ACH52_3538
GntR family transcriptional regulator.
 
     0.737
ACH52_3605
TetR family transcriptional regulator.
 
     0.733
hemC
Hydroxymethylbilane synthase/uroporphyrinogen-III methyltransferase/synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 
 0.690
ACH52_0802
Hypothetical protein.
  
     0.676
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.