Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_3642GntR family transcriptional regulator. (465 aa)    
Predicted Functional Partners:
ACH52_3645
5'-nucleotidase domain-containing protein.
 
     0.826
ACH52_2472
Sugar ABC transporter substrate-binding protein.
 
 
   0.751
ACH52_2479
Histidine kinase/PAS domain-containing protein.
  
   
 0.738
ACH52_3644
Two component system histidine kinase/response regulator hybrid protein.
 
   
 0.733
ACH52_2531
Hypothetical protein.
  
     0.727
ACH52_1434
ABC transporter substrate-binding protein.
 
 
   0.725
ACH52_1070
Two component system histidine kinase/response regulator hybrid protein.
  
   
 0.723
ACH52_1069
Hpt domain-containing protein.
  
     0.701
ACH52_3374
Two component system histidine kinase/response regulator hybrid protein.
  
   
 0.687
ACH52_2691
Two component system histidine kinase/response regulator hybrid protein.
  
     0.683
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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