Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ACH52_3700Two component system response regulator. (272 aa)    
Predicted Functional Partners:
ACH52_3701
Two component system histidine kinase.
 
     0.953
ACH52_3702
GGDEF/EAL domain-containing protein.
 
     0.807
ACH52_0472
Two component system histidine kinase.
  
     0.722
ACH52_3335
Two component system histidine kinase.
 
     0.720
ACH52_3169
Two component system histidine kinase.
 
     0.718
ACH52_3703
GntR family transcriptional regulator.
       0.718
ACH52_3704
Cobalamin B12-binding domain-containing protein.
       0.718
ACH52_3239
Two component system LytTr family DNA-binding response regulator.
  
     0.689
ACH52_3334
Two component system response regulator.
  
     0.441
fbp
Fructose-1,6-bisphosphatase Fbp.
       0.426
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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