Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ACH52_3770GntR family transcriptional regulator. (218 aa)    
Predicted Functional Partners:
ACH52_0190
GntR family transcriptional regulator.
  
     0.775
ACH52_2409
GntR family transcriptional regulator.
 
  
 0.739
ACH52_2114
GntR family transcriptional regulator.
 
  
 0.731
ACH52_0189
IclR family transcriptional regulator.
  
  
 0.667
ACH52_1162
Acetolactate synthase small subunit IlvN.
  
    0.585
ACH52_3769
Metallophosphoesterase.
       0.509
ACH52_3768
Sugar ABC transporter substrate-binding protein.
       0.462
ACH52_3764
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.438
ACH52_3765
Protein tyrosine/serine phosphatase.
       0.438
ACH52_3766
Sugar ABC transporter permease protein.
       0.438
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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