Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACH52_3775ABC transporter ATP-binding protein. (307 aa)    
Predicted Functional Partners:
ACH52_3771
Two component system histidine kinase.
 
     0.816
ACH52_3773
Hypothetical protein.
       0.776
ACH52_3774
Hypothetical protein.
       0.776
ACH52_3772
Hypothetical protein.
       0.754
ACH52_3777
Translation elongation factor G-like protein.
 
  
 0.656
ACH52_3776
Two component system response regulator.
 
    0.640
ACH52_3790
Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
     
0.637
ACH52_1465
Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein.
     
0.617
ACH52_2406
GntR family transcriptional regulator.
 
    0.611
ACH52_1842
ABC transporter permease protein.
 
  
 0.571
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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